J3_9TI6_012

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI6_012 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0892

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9TI6|1|A|G|1468
9TI6|1|A|G|1469
9TI6|1|A|G|1470
9TI6|1|A|A|1471
9TI6|1|A|C|1472
9TI6|1|A|G|1473
*
9TI6|1|A|C|1611
9TI6|1|A|C|1612
*
9TI6|1|A|G|1615
9TI6|1|A|A|1616
9TI6|1|A|A|1617
9TI6|1|A|A|1618
9TI6|1|A|A|1619
9TI6|1|A|G|1620
9TI6|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2