J3_9TI6_026

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI6_026 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.102

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9TI6|1|a|C|945
9TI6|1|a|A|946
9TI6|1|a|A|947
9TI6|1|a|G|948
*
9TI6|1|a|C|1354
9TI6|1|a|U|1355
9TI6|1|a|A|1356
9TI6|1|a|G|1357
9TI6|1|a|U|1358
9TI6|1|a|A|1359
9TI6|1|a|A|1360
*
9TI6|1|a|U|1382
9TI6|1|a|G|1383
9TI6|1|a|A|1384
9TI6|1|a|A|1385
9TI6|1|a|U|1386
9TI6|1|a|A|1387
9TI6|1|a|C|1388
9TI6|1|a|G|1389

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9