J3_9TI6_030

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

9TI6|1|a|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI6_030 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1912

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9TI6|1|a|C|999
9TI6|1|a|U|1000
9TI6|1|a|U|1001
9TI6|1|a|G|1002
9TI6|1|a|A|1003
9TI6|1|a|C|1004
9TI6|1|a|A|1005
9TI6|1|a|U|1006
*
9TI6|1|a|A|1055
9TI6|1|a|C|1056
9TI6|1|a|A|1057
9TI6|1|a|G|1058
*
9TI6|1|a|C|1220
9TI6|1|a|U|1221
9TI6|1|a|U|1222
9TI6|1|a|A|1223
9TI6|1|a|U|1224
9TI6|1|a|G|1225

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z