J3_9TI7_005

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9TI7|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI7_005 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.1758

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9TI7|1|A|C|272
9TI7|1|A|A|273
9TI7|1|A|A|274
9TI7|1|A|A|275
9TI7|1|A|C|276
*
9TI7|1|A|G|295
9TI7|1|A|G|296
9TI7|1|A|G|297
9TI7|1|A|U|298
9TI7|1|A|U|299
9TI7|1|A|G|300
9TI7|1|A|U|301
9TI7|1|A|A|302
*
9TI7|1|A|U|415
9TI7|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains