J3_9TI7_009

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9TI7|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI7_009 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1941

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9TI7|1|A|C|1335
9TI7|1|A|G|1336
9TI7|1|A|A|1337
9TI7|1|A|U|1338
9TI7|1|A|U|1339
9TI7|1|A|G|1340
*
9TI7|1|A|C|1669
9TI7|1|A|A|1670
9TI7|1|A|A|1671
*
9TI7|1|A|U|1683
9TI7|1|A|A|1684
9TI7|1|A|A|1685
9TI7|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains