J3_9TI7_011

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

9TI7|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI7_011 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1365

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.3

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9TI7|1|A|U|1381
9TI7|1|A|C|1382
9TI7|1|A|G|1383
9TI7|1|A|G|1384
9TI7|1|A|G|1385
9TI7|1|A|U|1386
9TI7|1|A|C|1387
*
9TI7|1|A|G|1418
9TI7|1|A|A|1419
9TI7|1|A|U|1420
9TI7|1|A|A|1421
9TI7|1|A|A|1422
*
9TI7|1|A|U|1439
9TI7|1|A|A|1440

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23