J3_9TI7_035

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

9TI7|1|a|U|1250, 9TI7|1|a|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI7_035 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.3196

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9TI7|1|a|C|1247
9TI7|1|a|A|1248
9TI7|1|a|A|1249
9TI7|1|a|U|1250
9TI7|1|a|G|1251
*
9TI7|1|a|C|1306
9TI7|1|a|U|1307
9TI7|1|a|C|1308
9TI7|1|a|A|1309
9TI7|1|a|G|1310
9TI7|1|a|U|1311
9TI7|1|a|U|1312
9TI7|1|a|C|1313
*
9TI7|1|a|G|1344
9TI7|1|a|C|1345
9TI7|1|a|U|1346
9TI7|1|a|G|1347

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain n

30S ribosomal protein S13