J3_9TI8_010

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI8_010 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1989

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9TI8|1|A|C|1335
9TI8|1|A|G|1336
9TI8|1|A|A|1337
9TI8|1|A|U|1338
9TI8|1|A|U|1339
9TI8|1|A|G|1340
*
9TI8|1|A|C|1669
9TI8|1|A|A|1670
9TI8|1|A|A|1671
*
9TI8|1|A|U|1683
9TI8|1|A|A|1684
9TI8|1|A|A|1685
9TI8|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains