J3_9TI8_012

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

9TI8|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI8_012 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1397

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.3

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9TI8|1|A|U|1381
9TI8|1|A|C|1382
9TI8|1|A|G|1383
9TI8|1|A|G|1384
9TI8|1|A|G|1385
9TI8|1|A|U|1386
9TI8|1|A|C|1387
*
9TI8|1|A|G|1418
9TI8|1|A|A|1419
9TI8|1|A|U|1420
9TI8|1|A|A|1421
9TI8|1|A|A|1422
*
9TI8|1|A|U|1439
9TI8|1|A|A|1440

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23