J3_9TI9_009

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9TI9|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI9_009 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1951

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9TI9|1|A|C|1335
9TI9|1|A|G|1336
9TI9|1|A|A|1337
9TI9|1|A|U|1338
9TI9|1|A|U|1339
9TI9|1|A|G|1340
*
9TI9|1|A|C|1669
9TI9|1|A|A|1670
9TI9|1|A|A|1671
*
9TI9|1|A|U|1683
9TI9|1|A|A|1684
9TI9|1|A|A|1685
9TI9|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains