J3_9TKO_012

3D structure

PDB id

9TKO (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 bound (30S PIC-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAG*UGUGCC*GGAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKO|1|D1|G|1003
9TKO|1|D1|A|1004
9TKO|1|D1|A|1005
9TKO|1|D1|G|1006
*
9TKO|1|D1|U|1023
9TKO|1|D1|G|1024
9TKO|1|D1|U|1025
9TKO|1|D1|G|1026
9TKO|1|D1|C|1027
9TKO|1|D1|C|1028
*
9TKO|1|D1|G|1033
9TKO|1|D1|G|1034
9TKO|1|D1|A|1035
9TKO|1|D1|A|1036
9TKO|1|D1|C|1037

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AM

Small ribosomal subunit protein uS14