J3_9TMI_021
3D structure
- PDB id
- 9TMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 9TMI|1|a|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TMI_021 not in the Motif Atlas
- Geometric match to J3_8B0X_034
- Geometric discrepancy: 0.0296
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9TMI|1|a|G|297
9TMI|1|a|G|298
9TMI|1|a|A|299
9TMI|1|a|A|300
9TMI|1|a|G|301
*
9TMI|1|a|C|316
9TMI|1|a|G|317
9TMI|1|a|C|318
9TMI|1|a|G|319
9TMI|1|a|A|320
9TMI|1|a|U|321
9TMI|1|a|A|322
9TMI|1|a|C|323
9TMI|1|a|A|324
9TMI|1|a|G|325
*
9TMI|1|a|C|337
9TMI|1|a|G|338
9TMI|1|a|U|339
9TMI|1|a|A|340
9TMI|1|a|C|341
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: