J3_9TMI_023

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TMI_023 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.108

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9TMI|1|a|C|698
9TMI|1|a|A|699
9TMI|1|a|G|700
*
9TMI|1|a|C|732
9TMI|1|a|G|733
9TMI|1|a|A|734
9TMI|1|a|A|735
9TMI|1|a|C|736
*
9TMI|1|a|G|760
9TMI|1|a|A|761
9TMI|1|a|U|762
9TMI|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2