J3_9TMI_024

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9TMI|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TMI_024 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2017

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9TMI|1|a|C|1298
9TMI|1|a|G|1299
9TMI|1|a|G|1300
9TMI|1|a|A|1301
9TMI|1|a|A|1302
9TMI|1|a|G|1303
*
9TMI|1|a|C|1625
9TMI|1|a|A|1626
9TMI|1|a|G|1627
*
9TMI|1|a|C|1639
9TMI|1|a|A|1640
9TMI|1|a|A|1641
9TMI|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains