J3_9TT7_012

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TT7|1|L5|A|2541
9TT7|1|L5|G|2542
9TT7|1|L5|A|2543
9TT7|1|L5|U|2544
9TT7|1|L5|G|2545
*
9TT7|1|L5|C|2562
9TT7|1|L5|A|2563
9TT7|1|L5|G|2564
9TT7|1|L5|U|2565
*
9TT7|1|L5|A|2747
9TT7|1|L5|G|2748
9TT7|1|L5|G|2749
9TT7|1|L5|G|2750
9TT7|1|L5|U|2751
9TT7|1|L5|G|2752
9TT7|1|L5|U|2753
9TT7|1|L5|A|2754
9TT7|1|L5|A|2755
9TT7|1|L5|A|2756
9TT7|1|L5|U|2757

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27