J3_9TT7_014

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TT7|1|L5|A|2588
9TT7|1|L5|G|2589
9TT7|1|L5|A|2590
9TT7|1|L5|A|2591
9TT7|1|L5|G|2592
*
9TT7|1|L5|C|2727
9TT7|1|L5|C|2728
*
9TT7|1|L5|G|2732
9TT7|1|L5|A|2733
9TT7|1|L5|A|2734
9TT7|1|L5|A|2735
9TT7|1|L5|A|2736
9TT7|1|L5|U|2737

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a