J3_9TV2_007

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|C|1542
9TV2|1|L5|A|1543
9TV2|1|L5|G|1544
*
9TV2|1|L5|C|1576
9TV2|1|L5|G|1577
9TV2|1|L5|PSU|1578
9TV2|1|L5|A|1579
9TV2|1|L5|G|1580
*
9TV2|1|L5|U|1605
9TV2|1|L5|C|1606
9TV2|1|L5|C|1607
9TV2|1|L5|G|1608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a