J3_9TV2_009

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9TV2|1|L5|A|2386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|C|2383
9TV2|1|L5|G|2384
9TV2|1|L5|A|2385
9TV2|1|L5|A|2386
9TV2|1|L5|G|2387
9TV2|1|L5|U|2388
9TV2|1|L5|G|2389
*
9TV2|1|L5|C|2795
9TV2|1|L5|A|2796
9TV2|1|L5|A|2797
*
9TV2|1|L5|U|2809
9TV2|1|L5|C|2810
9TV2|1|L5|U|2811
9TV2|1|L5|G|2812

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34