J3_9TV2_010
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9TV2|1|L5|U|2778, 9TV2|1|L5|A|2779, 9TV2|1|L5|U|2780
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|G|2392
9TV2|1|L5|A|2393
9TV2|1|L5|A|2394
9TV2|1|L5|G|2395
*
9TV2|1|L5|C|2775
9TV2|1|L5|C|2776
9TV2|1|L5|A2M|2777
9TV2|1|L5|U|2778
9TV2|1|L5|A|2779
9TV2|1|L5|U|2780
9TV2|1|L5|C|2781
*
9TV2|1|L5|G|2790
9TV2|1|L5|U|2791
9TV2|1|L5|C|2792
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- 60S ribosomal protein L39
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