J3_9TV2_018
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUUG*CCUUC*GCACCGCACGUUC
- Length
- 22 nucleotides
- Bulged bases
- 9TV2|1|L5|U|4867, 9TV2|1|L5|A|4923, 9TV2|1|L5|C|4925, 9TV2|1|L5|A|4928, 9TV2|1|L5|C|4929
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|G|4737
9TV2|1|L5|U|4738
9TV2|1|L5|U|4739
9TV2|1|L5|G|4740
*
9TV2|1|L5|C|4864
9TV2|1|L5|C|4865
9TV2|1|L5|U|4866
9TV2|1|L5|U|4867
9TV2|1|L5|C|4868
*
9TV2|1|L5|G|4921
9TV2|1|L5|C|4922
9TV2|1|L5|A|4923
9TV2|1|L5|C|4924
9TV2|1|L5|C|4925
9TV2|1|L5|G|4926
9TV2|1|L5|C|4927
9TV2|1|L5|A|4928
9TV2|1|L5|C|4929
9TV2|1|L5|G|4930
9TV2|1|L5|U|4931
9TV2|1|L5|U|4932
9TV2|1|L5|C|4933
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
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