J3_9TV2_035
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9TV2|1|S2|U|1535, 9TV2|1|S2|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|S2|C|1532
9TV2|1|S2|A|1533
9TV2|1|S2|C|1534
9TV2|1|S2|U|1535
9TV2|1|S2|G|1536
*
9TV2|1|S2|C|1597
9TV2|1|S2|G|1598
9TV2|1|S2|U|1599
9TV2|1|S2|G|1600
9TV2|1|S2|A|1601
9TV2|1|S2|U|1602
9TV2|1|S2|G|1603
9TV2|1|S2|G|1604
*
9TV2|1|S2|C|1635
9TV2|1|S2|G|1636
9TV2|1|S2|A|1637
9TV2|1|S2|G|1638
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- Small ribosomal subunit protein eS19
- Chain SZ
- Small ribosomal subunit protein eS25
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