J3_9TZ5_001
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GC*GUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ5_001 not in the Motif Atlas
- Geometric match to J3_8B0X_014
- Geometric discrepancy: 0.0309
- The information below is about J3_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
9TZ5|1|a|G|38
9TZ5|1|a|C|39
*
9TZ5|1|a|G|479
9TZ5|1|a|U|480
9TZ5|1|a|G|481
9TZ5|1|a|A|482
9TZ5|1|a|A|483
9TZ5|1|a|A|484
9TZ5|1|a|A|485
9TZ5|1|a|G|486
*
9TZ5|1|a|C|514
9TZ5|1|a|C|515
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL24
- Chain e
- Large ribosomal subunit protein bL20
- Chain j
- Large ribosomal subunit protein uL22
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