J3_9TZ5_020
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GCCAUAG*CG*UCAC
- Length
- 13 nucleotides
- Bulged bases
- 9TZ5|1|b|U|14, 9TZ5|1|b|C|106
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ5_020 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.4019
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9TZ5|1|b|G|10
9TZ5|1|b|C|11
9TZ5|1|b|C|12
9TZ5|1|b|A|13
9TZ5|1|b|U|14
9TZ5|1|b|A|15
9TZ5|1|b|G|16
*
9TZ5|1|b|C|68
9TZ5|1|b|G|69
*
9TZ5|1|b|U|105
9TZ5|1|b|C|106
9TZ5|1|b|A|107
9TZ5|1|b|C|108
Current chains
- Chain b
- 5S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL18
- Chain 8
- Large ribosomal subunit protein bL27
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain u
- Large ribosomal subunit protein bL25
Coloring options: