J3_9TZ9_006
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CGAUCUA*UAG*CAAG
- Length
- 14 nucleotides
- Bulged bases
- 9TZ9|1|a|U|693, 9TZ9|1|a|A|799, 9TZ9|1|a|A|800
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ9_006 not in the Motif Atlas
- Geometric match to J3_7A0S_004
- Geometric discrepancy: 0.086
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZ9|1|a|C|690
9TZ9|1|a|G|691
9TZ9|1|a|A|692
9TZ9|1|a|U|693
9TZ9|1|a|C|694
9TZ9|1|a|U|695
9TZ9|1|a|A|696
*
9TZ9|1|a|U|780
9TZ9|1|a|A|781
9TZ9|1|a|G|782
*
9TZ9|1|a|C|798
9TZ9|1|a|A|799
9TZ9|1|a|A|800
9TZ9|1|a|G|801
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain o
- Large ribosomal subunit protein uL2
- Chain y
- Large ribosomal subunit protein bL34
Coloring options: