J3_9TZ9_014
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GUA*UCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9TZ9|1|a|A|2404, 9TZ9|1|a|A|2442
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ9_014 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.178
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9TZ9|1|a|G|2298
9TZ9|1|a|U|2299
9TZ9|1|a|A|2300
*
9TZ9|1|a|U|2400
9TZ9|1|a|C|2401
9TZ9|1|a|U|2402
9TZ9|1|a|U|2403
9TZ9|1|a|A|2404
9TZ9|1|a|G|2405
9TZ9|1|a|U|2406
9TZ9|1|a|G|2407
9TZ9|1|a|A|2408
9TZ9|1|a|U|2409
9TZ9|1|a|C|2410
9TZ9|1|a|C|2411
*
9TZ9|1|a|G|2437
9TZ9|1|a|C|2438
9TZ9|1|a|U|2439
9TZ9|1|a|C|2440
9TZ9|1|a|A|2441
9TZ9|1|a|A|2442
9TZ9|1|a|C|2443
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 8
- Large ribosomal subunit protein bL27
- Chain k
- Large ribosomal subunit protein uL15
- Chain z
- Large ribosomal subunit protein bL35
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