J3_9TZE_009
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- UUUAAUUC*GAAAAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9TZE|1|A|A|971, 9TZE|1|A|A|972, 9TZE|1|A|A|974
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZE_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.056
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9TZE|1|A|U|951
9TZE|1|A|U|952
9TZE|1|A|U|953
9TZE|1|A|A|954
9TZE|1|A|A|955
9TZE|1|A|U|956
9TZE|1|A|U|957
9TZE|1|A|C|958
*
9TZE|1|A|G|969
9TZE|1|A|A|970
9TZE|1|A|A|971
9TZE|1|A|A|972
9TZE|1|A|A|973
9TZE|1|A|A|974
9TZE|1|A|C|975
9TZE|1|A|C|976
9TZE|1|A|U|977
9TZE|1|A|U|978
9TZE|1|A|A|979
9TZE|1|A|C|980
*
9TZE|1|A|G|1218
9TZE|1|A|G|1219
9TZE|1|A|C|1220
9TZE|1|A|U|1221
9TZE|1|A|A|1222
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Ribosome hibernation promoting factor
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: