J3_9TZE_016
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9TZE|1|A|U|1180
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZE_016 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1673
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9TZE|1|A|C|1112
9TZE|1|A|G|1113
9TZE|1|A|U|1114
*
9TZE|1|A|A|1152
9TZE|1|A|G|1153
9TZE|1|A|A|1154
9TZE|1|A|C|1155
9TZE|1|A|U|1156
9TZE|1|A|G|1157
9TZE|1|A|C|1158
*
9TZE|1|A|G|1172
9TZE|1|A|A|1173
9TZE|1|A|G|1174
9TZE|1|A|G|1175
9TZE|1|A|A|1176
9TZE|1|A|A|1177
9TZE|1|A|G|1178
9TZE|1|A|G|1179
9TZE|1|A|U|1180
9TZE|1|A|G|1181
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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