J3_9TZE_025

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TZE_025 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1138

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9TZE|1|a|C|705
9TZE|1|a|A|706
9TZE|1|a|G|707
*
9TZE|1|a|C|739
9TZE|1|a|G|740
9TZE|1|a|A|741
9TZE|1|a|A|742
9TZE|1|a|C|743
*
9TZE|1|a|G|767
9TZE|1|a|A|768
9TZE|1|a|U|769
9TZE|1|a|G|770

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2