J3_9UZK_002

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

9UZK|1|2|A|223, 9UZK|1|2|U|224, 9UZK|1|2|C|225, 9UZK|1|2|U|276, 9UZK|1|2|U|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|220
9UZK|1|2|A|221
9UZK|1|2|G|222
9UZK|1|2|A|223
9UZK|1|2|U|224
9UZK|1|2|C|225
9UZK|1|2|A|226
9UZK|1|2|A|227
9UZK|1|2|A|228
9UZK|1|2|A|229
9UZK|1|2|C|230
9UZK|1|2|C|231
9UZK|1|2|A|232
9UZK|1|2|A|233
9UZK|1|2|C|234
9UZK|1|2|C|235
*
9UZK|1|2|G|274
9UZK|1|2|C|275
9UZK|1|2|U|276
9UZK|1|2|U|277
9UZK|1|2|U|278
9UZK|1|2|G|279
*
9UZK|1|2|C|286
9UZK|1|2|U|287
9UZK|1|2|A|288
9UZK|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17