J3_9UZK_010
3D structure
- PDB id
- 9UZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S with initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 9UZK|1|2|G|1252, 9UZK|1|2|A|1254, 9UZK|1|2|A|1256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9UZK|1|2|C|1233
9UZK|1|2|U|1234
9UZK|1|2|U|1235
9UZK|1|2|A|1236
9UZK|1|2|A|1237
9UZK|1|2|U|1238
9UZK|1|2|U|1239
9UZK|1|2|U|1240
9UZK|1|2|G|1241
*
9UZK|1|2|C|1250
9UZK|1|2|G|1251
9UZK|1|2|G|1252
9UZK|1|2|G|1253
9UZK|1|2|A|1254
9UZK|1|2|A|1255
9UZK|1|2|A|1256
9UZK|1|2|C|1257
9UZK|1|2|C|1258
9UZK|1|2|U|1259
9UZK|1|2|C|1260
9UZK|1|2|A|1261
9UZK|1|2|C|1262
*
9UZK|1|2|G|1511
9UZK|1|2|G|1512
9UZK|1|2|C|1513
9UZK|1|2|U|1514
9UZK|1|2|G|1515
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS13
- Chain W
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14
- Chain f
- Ubiquitin-ribosomal protein eS31 fusion protein
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