J3_9UZK_011

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9UZK|1|2|G|1270, 9UZK|1|2|G|1503, 9UZK|1|2|U|1505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|1268
9UZK|1|2|C|1269
9UZK|1|2|G|1270
9UZK|1|2|G|1271
9UZK|1|2|A|1272
9UZK|1|2|C|1273
*
9UZK|1|2|G|1316
9UZK|1|2|G|1317
9UZK|1|2|G|1318
9UZK|1|2|U|1319
9UZK|1|2|G|1320
*
9UZK|1|2|U|1500
9UZK|1|2|U|1501
9UZK|1|2|A|1502
9UZK|1|2|G|1503
9UZK|1|2|A|1504
9UZK|1|2|U|1505
9UZK|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein eS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein