J3_9UZL_002

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

9UZL|1|2|C|225, 9UZL|1|2|U|276, 9UZL|1|2|U|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|220
9UZL|1|2|A|221
9UZL|1|2|G|222
9UZL|1|2|A|223
9UZL|1|2|U|224
9UZL|1|2|C|225
9UZL|1|2|A|226
9UZL|1|2|A|227
9UZL|1|2|A|228
9UZL|1|2|A|229
9UZL|1|2|C|230
9UZL|1|2|C|231
9UZL|1|2|A|232
9UZL|1|2|A|233
9UZL|1|2|C|234
9UZL|1|2|C|235
*
9UZL|1|2|G|274
9UZL|1|2|C|275
9UZL|1|2|U|276
9UZL|1|2|U|277
9UZL|1|2|U|278
9UZL|1|2|G|279
*
9UZL|1|2|C|286
9UZL|1|2|U|287
9UZL|1|2|A|288
9UZL|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17