J3_9UZL_005

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|A|812
9UZL|1|2|G|813
9UZL|1|2|A|814
9UZL|1|2|G|815
*
9UZL|1|2|C|825
9UZL|1|2|A|826
9UZL|1|2|G|827
*
9UZL|1|2|C|839
9UZL|1|2|U|840
9UZL|1|2|G|841
9UZL|1|2|G|842
9UZL|1|2|A|843
9UZL|1|2|U|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24