J3_9UZL_010

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9UZL|1|2|G|1252, 9UZL|1|2|A|1254, 9UZL|1|2|A|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|1233
9UZL|1|2|U|1234
9UZL|1|2|U|1235
9UZL|1|2|A|1236
9UZL|1|2|A|1237
9UZL|1|2|U|1238
9UZL|1|2|U|1239
9UZL|1|2|U|1240
*
9UZL|1|2|G|1251
9UZL|1|2|G|1252
9UZL|1|2|G|1253
9UZL|1|2|A|1254
9UZL|1|2|A|1255
9UZL|1|2|A|1256
9UZL|1|2|C|1257
9UZL|1|2|C|1258
9UZL|1|2|U|1259
9UZL|1|2|C|1260
9UZL|1|2|A|1261
9UZL|1|2|C|1262
*
9UZL|1|2|G|1511
9UZL|1|2|G|1512
9UZL|1|2|C|1513
9UZL|1|2|U|1514
9UZL|1|2|G|1515

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein