J3_9UZL_011

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9UZL|1|2|G|1270, 9UZL|1|2|G|1503, 9UZL|1|2|U|1505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|1268
9UZL|1|2|C|1269
9UZL|1|2|G|1270
9UZL|1|2|G|1271
9UZL|1|2|A|1272
9UZL|1|2|C|1273
*
9UZL|1|2|G|1316
9UZL|1|2|G|1317
9UZL|1|2|G|1318
9UZL|1|2|U|1319
9UZL|1|2|G|1320
*
9UZL|1|2|U|1500
9UZL|1|2|U|1501
9UZL|1|2|A|1502
9UZL|1|2|G|1503
9UZL|1|2|A|1504
9UZL|1|2|U|1505
9UZL|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein eS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein