J3_9UZL_014

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CUGGC*GGAC*GAUUG

Length

14 nucleotides

Bulged bases

9UZL|1|2|A|1472, 9UZL|1|2|U|1473

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|1387
9UZL|1|2|U|1388
9UZL|1|2|G|1389
9UZL|1|2|G|1390
9UZL|1|2|C|1391
*
9UZL|1|2|G|1446
9UZL|1|2|G|1447
9UZL|1|2|A|1448
9UZL|1|2|C|1449
*
9UZL|1|2|G|1471
9UZL|1|2|A|1472
9UZL|1|2|U|1473
9UZL|1|2|U|1474
9UZL|1|2|G|1475

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain H

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS17

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14

Chain g

Small ribosomal subunit protein RACK1