J3_9UZM_002

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GCUUUG*CUAG

Length

27 nucleotides

Bulged bases

9UZM|1|2|A|223, 9UZM|1|2|U|224, 9UZM|1|2|C|225, 9UZM|1|2|C|275, 9UZM|1|2|U|276, 9UZM|1|2|U|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZM|1|2|C|220
9UZM|1|2|A|221
9UZM|1|2|G|222
9UZM|1|2|A|223
9UZM|1|2|U|224
9UZM|1|2|C|225
9UZM|1|2|A|226
9UZM|1|2|A|227
9UZM|1|2|A|228
9UZM|1|2|A|229
9UZM|1|2|C|230
9UZM|1|2|C|231
9UZM|1|2|A|232
9UZM|1|2|A|233
9UZM|1|2|C|234
9UZM|1|2|C|235
9UZM|1|2|C|236
*
9UZM|1|2|G|274
9UZM|1|2|C|275
9UZM|1|2|U|276
9UZM|1|2|U|277
9UZM|1|2|U|278
9UZM|1|2|G|279
*
9UZM|1|2|C|286
9UZM|1|2|U|287
9UZM|1|2|A|288
9UZM|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17