J3_9UZM_010

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9UZM|1|2|G|1252, 9UZM|1|2|A|1254, 9UZM|1|2|A|1255, 9UZM|1|2|A|1256, 9UZM|1|2|U|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZM|1|2|C|1233
9UZM|1|2|U|1234
9UZM|1|2|U|1235
9UZM|1|2|A|1236
9UZM|1|2|A|1237
9UZM|1|2|U|1238
9UZM|1|2|U|1239
9UZM|1|2|U|1240
*
9UZM|1|2|G|1251
9UZM|1|2|G|1252
9UZM|1|2|G|1253
9UZM|1|2|A|1254
9UZM|1|2|A|1255
9UZM|1|2|A|1256
9UZM|1|2|C|1257
9UZM|1|2|C|1258
9UZM|1|2|U|1259
9UZM|1|2|C|1260
9UZM|1|2|A|1261
9UZM|1|2|C|1262
*
9UZM|1|2|G|1511
9UZM|1|2|G|1512
9UZM|1|2|C|1513
9UZM|1|2|U|1514
9UZM|1|2|G|1515

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein