J3_9VTH_001
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_001 not in the Motif Atlas
- Homologous match to J3_9PN5_027
- Geometric discrepancy: 0.0913
- The information below is about J3_9PN5_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|A|41
9VTH|1|11|G|42
*
9VTH|1|11|C|437
9VTH|1|11|G|438
9VTH|1|11|C|439
9VTH|1|11|A|440
9VTH|1|11|A|441
9VTH|1|11|A|442
9VTH|1|11|U|443
*
9VTH|1|11|A|468
9VTH|1|11|G|469
9VTH|1|11|U|470
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S9-2-like
- Chain SJ
- 40S ribosomal protein S23
Coloring options: