J3_9VTH_002
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGGA*UUAACA*UA
- Length
- 12 nucleotides
- Bulged bases
- 9VTH|1|11|C|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|11|U|636
9VTH|1|11|G|637
9VTH|1|11|G|638
9VTH|1|11|A|639
*
9VTH|1|11|U|863
9VTH|1|11|U|864
9VTH|1|11|A|865
9VTH|1|11|A|866
9VTH|1|11|C|867
9VTH|1|11|A|868
*
9VTH|1|11|U|968
9VTH|1|11|A|969
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS8c
- Chain SJ
- 40S ribosomal protein S23
- Chain SM
- 40S ribosomal protein S13
- Chain SN
- 40S ribosomal protein S11
- Chain SS
- 40S ribosomal protein S7
- Chain Sc
- 40S ribosomal protein S27
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