J3_9VTH_004
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGAG*CAA*UCUGUAU
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|11|C|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_004 not in the Motif Atlas
- Homologous match to J3_9H3G_032
- Geometric discrepancy: 0.1188
- The information below is about J3_9H3G_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.5
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VTH|1|11|A|764
9VTH|1|11|G|765
9VTH|1|11|A|766
9VTH|1|11|G|767
*
9VTH|1|11|C|777
9VTH|1|11|A|778
9VTH|1|11|A|779
*
9VTH|1|11|U|788
9VTH|1|11|C|789
9VTH|1|11|U|790
9VTH|1|11|G|791
9VTH|1|11|U|792
9VTH|1|11|A|793
9VTH|1|11|U|794
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S9-2-like
- Chain SQ
- 40S ribosomal protein S4
- Chain SZ
- 40S ribosomal protein S24
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