J3_9VTH_009
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUUAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9VTH|1|11|G|1202, 9VTH|1|11|G|1204, 9VTH|1|11|A|1206
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_009 not in the Motif Atlas
- Homologous match to J3_9PN5_037
- Geometric discrepancy: 0.0836
- The information below is about J3_9PN5_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|C|1183
9VTH|1|11|U|1184
9VTH|1|11|U|1185
9VTH|1|11|A|1186
9VTH|1|11|A|1187
9VTH|1|11|U|1188
9VTH|1|11|U|1189
9VTH|1|11|U|1190
*
9VTH|1|11|G|1201
9VTH|1|11|G|1202
9VTH|1|11|G|1203
9VTH|1|11|G|1204
9VTH|1|11|A|1205
9VTH|1|11|A|1206
9VTH|1|11|A|1207
9VTH|1|11|C|1208
9VTH|1|11|U|1209
9VTH|1|11|U|1210
9VTH|1|11|A|1211
9VTH|1|11|C|1212
*
9VTH|1|11|G|1459
9VTH|1|11|G|1460
9VTH|1|11|C|1461
9VTH|1|11|C|1462
9VTH|1|11|G|1463
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S20-2
- Chain SK
- 40S ribosomal protein S18
- Chain SL
- 40S ribosomal protein S29
- Chain SO
- 40S ribosomal protein S15-like
Coloring options: