J3_9VTH_020
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AC*GAUACUU*AGUCU
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|13|U|63, 9VTH|1|13|C|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_020 not in the Motif Atlas
- Homologous match to J3_9H3G_004
- Geometric discrepancy: 0.0889
- The information below is about J3_9H3G_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.4
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|13|A|47
9VTH|1|13|C|48
*
9VTH|1|13|G|61
9VTH|1|13|A|62
9VTH|1|13|U|63
9VTH|1|13|A|64
9VTH|1|13|C|65
9VTH|1|13|U|66
9VTH|1|13|U|67
*
9VTH|1|13|A|99
9VTH|1|13|G|100
9VTH|1|13|U|101
9VTH|1|13|C|102
9VTH|1|13|U|103
Current chains
- Chain 13
- 5.8S rRNA
Nearby chains
- Chain LM
- Large ribosomal subunit protein uL23
- Chain LO
- 60S ribosomal protein L35-like
- Chain Lk
- Ribosomal protein L37
- Chain Lm
- 60S ribosomal protein L39-3
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