J3_9VTH_021

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAGCCUUAGAA*UAGUCUGGAG*CUACG

Length

26 nucleotides

Bulged bases

9VTH|1|14|A|118, 9VTH|1|14|G|119, 9VTH|1|14|G|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VTH_021 not in the Motif Atlas

Homologous match to J3_9H3G_005

Geometric discrepancy: 0.1864

The information below is about J3_9H3G_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69230.4

Basepair signature

cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9VTH|1|14|C|111
9VTH|1|14|A|112
9VTH|1|14|G|113
9VTH|1|14|C|114
9VTH|1|14|C|115
9VTH|1|14|U|116
9VTH|1|14|U|117
9VTH|1|14|A|118
9VTH|1|14|G|119
9VTH|1|14|A|120
9VTH|1|14|A|121
*
9VTH|1|14|U|147
9VTH|1|14|A|148
9VTH|1|14|G|149
9VTH|1|14|U|150
9VTH|1|14|C|151
9VTH|1|14|U|152
9VTH|1|14|G|153
9VTH|1|14|G|154
9VTH|1|14|A|155
9VTH|1|14|G|156
*
9VTH|1|14|C|260
9VTH|1|14|U|261
9VTH|1|14|A|262
9VTH|1|14|C|263
9VTH|1|14|G|264

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L35-like

Chain LR

60S ribosomal protein L7a

Chain LS

60S ribosomal protein L13

Chain LU

Ribosomal protein L15

Chain Lj

60S ribosomal protein L36