J3_9VTH_024
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGG*UGUGGUAGGCA*UCCGGA
- Length
- 20 nucleotides
- Bulged bases
- 9VTH|1|14|U|574, 9VTH|1|14|G|576, 9VTH|1|14|C|616
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_024 not in the Motif Atlas
- Homologous match to J3_9H3G_010
- Geometric discrepancy: 0.1048
- The information below is about J3_9H3G_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|U|506
9VTH|1|14|G|507
9VTH|1|14|G|508
*
9VTH|1|14|U|569
9VTH|1|14|G|570
9VTH|1|14|U|571
9VTH|1|14|G|572
9VTH|1|14|G|573
9VTH|1|14|U|574
9VTH|1|14|A|575
9VTH|1|14|G|576
9VTH|1|14|G|577
9VTH|1|14|C|578
9VTH|1|14|A|579
*
9VTH|1|14|U|615
9VTH|1|14|C|616
9VTH|1|14|C|617
9VTH|1|14|G|618
9VTH|1|14|G|619
9VTH|1|14|A|620
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LQ
- 60S ribosomal protein L6-like isoform X1
- Chain Lc
- 60S ribosomal protein L28-1-like
- Chain Lg
- 60S ribosomal protein L32-1
- Chain Lh
- 60S ribosomal protein L35a-3-like
Coloring options: