J3_9VTH_025

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CG*CG*CUG

Length

7 nucleotides

Bulged bases

9VTH|1|14|U|608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9VTH_025 not in the Motif Atlas

Homologous match to J3_9H3G_011

Geometric discrepancy: 0.2883

The information below is about J3_9H3G_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VTH|1|14|C|585
9VTH|1|14|G|586
*
9VTH|1|14|C|594
9VTH|1|14|G|595
*
9VTH|1|14|C|607
9VTH|1|14|U|608
9VTH|1|14|G|609

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L7-4-like

Chain LQ

60S ribosomal protein L6-like isoform X1