J3_9VTH_026
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9VTH|1|14|A|827, 9VTH|1|14|G|934, 9VTH|1|14|A|935
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_026 not in the Motif Atlas
- Homologous match to J3_9PN5_008
- Geometric discrepancy: 0.0745
- The information below is about J3_9PN5_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9VTH|1|14|U|824
9VTH|1|14|G|825
9VTH|1|14|A|826
9VTH|1|14|A|827
9VTH|1|14|C|828
9VTH|1|14|U|829
9VTH|1|14|A|830
*
9VTH|1|14|U|915
9VTH|1|14|A|916
9VTH|1|14|G|917
*
9VTH|1|14|C|933
9VTH|1|14|G|934
9VTH|1|14|A|935
9VTH|1|14|A|936
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L8-like
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
Coloring options: