J3_9VTH_028
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UC*GGACG*CACGGA
- Length
- 13 nucleotides
- Bulged bases
- 9VTH|1|14|C|1077, 9VTH|1|14|C|1106
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_028 not in the Motif Atlas
- Homologous match to J3_9H3G_014
- Geometric discrepancy: 0.137
- The information below is about J3_9H3G_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9VTH|1|14|U|998
9VTH|1|14|C|999
*
9VTH|1|14|G|1074
9VTH|1|14|G|1075
9VTH|1|14|A|1076
9VTH|1|14|C|1077
9VTH|1|14|G|1078
*
9VTH|1|14|C|1104
9VTH|1|14|A|1105
9VTH|1|14|C|1106
9VTH|1|14|G|1107
9VTH|1|14|G|1108
9VTH|1|14|A|1109
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LY
- 60S ribosomal protein L21-1-like
- Chain Ld
- 60S ribosomal protein L29
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