J3_9VTH_032
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUC*GAUAG*CGUAC
- Length
- 13 nucleotides
- Bulged bases
- 9VTH|1|14|A|1568, 9VTH|1|14|U|1585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_032 not in the Motif Atlas
- Homologous match to J3_9H3G_018
- Geometric discrepancy: 0.2258
- The information below is about J3_9H3G_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|G|1549
9VTH|1|14|U|1550
9VTH|1|14|C|1551
*
9VTH|1|14|G|1567
9VTH|1|14|A|1568
9VTH|1|14|U|1569
9VTH|1|14|A|1570
9VTH|1|14|G|1571
*
9VTH|1|14|C|1583
9VTH|1|14|G|1584
9VTH|1|14|U|1585
9VTH|1|14|A|1586
9VTH|1|14|C|1587
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LB
- 60S ribosomal protein L8-like
- Chain LM
- Large ribosomal subunit protein uL23
- Chain LR
- 60S ribosomal protein L7a
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
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