J3_9VTH_035
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUUUG*CUUAU*AGACAUUG
- Length
- 18 nucleotides
- Bulged bases
- 9VTH|1|14|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VTH_035 not in the Motif Atlas
- Homologous match to J3_9H3G_021
- Geometric discrepancy: 0.0822
- The information below is about J3_9H3G_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|C|2434
9VTH|1|14|U|2435
9VTH|1|14|U|2436
9VTH|1|14|U|2437
9VTH|1|14|G|2438
*
9VTH|1|14|C|2517
9VTH|1|14|U|2518
9VTH|1|14|U|2519
9VTH|1|14|A|2520
9VTH|1|14|U|2521
*
9VTH|1|14|A|2594
9VTH|1|14|G|2595
9VTH|1|14|A|2596
9VTH|1|14|C|2597
9VTH|1|14|A|2598
9VTH|1|14|U|2599
9VTH|1|14|U|2600
9VTH|1|14|G|2601
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L8-like
- Chain LR
- 60S ribosomal protein L7a
- Chain LU
- Ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L36
Coloring options: